Plant MITE

SE1830080

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10408
Glycine max
SE1830080
hAT
Hat3
Gm20:30688629-30688821
TAATAGTA
GTACCTATGAAGCAC

Secondary structure and sequence

TSD TIR

5'

3'

TAATA    ----           C      ---   ACGGACACCGGACACGACACGGACACGGACACGTGGACACCTATAATGTCCAAAATATAGAACGTA
     GTAC    CTATGAAGCAC GACACC   GAC                                                                  
     ||||    ||||||||||| ||||||   |||                                                                   
     CATG    GATACTTCGTG CCTGTG   TCG                                                                  
         ATAA           -      AGG   AGGAACGGCACAGGCCACAGGCTGTGCGCAGGCACAGTCACAGACTGTGGCTGTGCTGTGGGCATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830080

TAATAGTACCTATGAAGCACCGACACCGACACGGACACCGGACACGACACGGACACGGACACGTGGACACCTATAATGTCCAAAATATAGAACGTAGTACGGGTGTCGTGTCGGTGTCAGACACTGACACGGACGCGTGTCGGACACCGGACACGGCAAGGAGCTGGAGTGTCCGTGCTTCATAGAATAGTAC

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