SE1850083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10411
  • Glycine max
  • SE1850083
  • PIF/harbinger
  • To13
  • Gm11:19190711-19191084
  • GTA
  • CTGTTAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTA        ---A     ACTCTAACAAAGATGATTATCACACACACAAAATCGGTGCAGTAGGCAAATCAGAGTCAAAGAGAAAGAAGTGAAAAAAGATTGAGAGAATTATCTAGAAATGGAAAGAACAAATGTACACAAGTGTACCCAAAGGAGCATTCTCCTTTCACACTGGATATTCCCAGT
   CTGTTAGG    ATCTT                                                                                                                                                                        
   ||||||||    |||||                                                                                                                                                                        T
   GACGATCC    TTTTA                                                                                                                                                                        
ATG        GTAC     GTTAAGGAGTTTTTTAATGTTCACATAATATCTTCCTTCTTATTTTTCCCTTTAATCAAAATTTTTCCCCGTCAATCTTCTCAATCATCCGAATCACACCCCCAAGAGATAATATTTATCGGAGATTTATGACTCTACCCTCCTAGAAAACATTTTTGAATGTATATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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