Plant MITE

SE1830084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10412
Glycine max
SE1830084
hAT
Hat4
Gm02:20657481-20658100
TTTATGTT
TATGTTTAGGGGTGAGAATAGGCCAG

Secondary structure and sequence

TSD TIR

5'

3'

TT    TT        A           ACC  C    A GGGCCTATGATCTGGCCTATATAAAGCCTGGCCTGAATTGGACTATTTAATTAAAAGGTTAGGCTCAGGCTTTTTTAAAAGCCTATTAAATTAAATAGACCAGGTCTAGGCTTATTAAAAAGCCTTATAAGCCTGATAGGCCGGCCTATATATATACTTATATTATTTTTTGGGTACCAATATATAATATTATTTTTTGGATACAATTAATTTATTTTTGAAACTATCAGACTTTGATTACACATTACTGCTCCATAACTTCTATTCCTATA
  TATG  TAGGGGTG GAATAGGCCAG   AG CTAC G                                                                                                                                                                                                                                                                                
  ||||  |||||||| |||||||||||   || |||| |                                                                                                                                                                                                                                                                                A
  GTAT  ATCCCCAC CTTATCCGGTC   CG GTCC G                                                                                                                                                                                                                                                                                
TT    TT        C           ---  -    - AAACTTTCCGGACTCGAATCAGATGCTACTTAGAAACTCCGAACTCGGACCGGATATCGGATAGTTTCCAAAAATAAAACCGAGCTGGTCTGGAAAAATTTTCAAACCGGACCGGACTATCGGAAAAATTTTCGGAAGAAGTGTTATTTATAAATTATTAAATACCTCATCCTTACATTATCCTTTCAATTTCTTTTTCCTTTCAGTTAGTTTTATTACTCCTTATATTTTCCCGTGTACTGAGTGTGGATTTAACGTTAATTTCAGTAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830084

TTTATGTTTAGGGGTGAGAATAGGCCAGACCAGCCTACAGGGGCCTATGATCTGGCCTATATAAAGCCTGGCCTGAATTGGACTATTTAATTAAAAGGTTAGGCTCAGGCTTTTTTAAAAGCCTATTAAATTAAATAGACCAGGTCTAGGCTTATTAAAAAGCCTTATAAGCCTGATAGGCCGGCCTATATATATACTTATATTATTTTTTGGGTACCAATATATAATATTATTTTTTGGATACAATTAATTTATTTTTGAAACTATCAGACTTTGATTACACATTACTGCTCCATAACTTCTATTCCTATAATCAATGACTTTAATTGCAATTTAGGTGTGAGTCATGTGCCCTTTTATATTCCTCATTATTTTGATTGACTTTCCTTTTTCTTTAACTTTCCTATTACATTCCTACTCCATAAATTATTAAATATTTATTGTGAAGAAGGCTTTTAAAAAGGCTATCAGGCCAGGCCAAACTTTTAAAAAGGTCTGGTCGAGCCAAAATAAAAACCTTTGATAGGCTATAGGCCAGGCTCAAGCCTCAAAGATTCATCGTAGACTAAGCTCAGGCCTTTCAAAGCCTGGCCTGGCCTATTCCCACCCCTATTTATGTT

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