Plant MITE

SE1820085

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10413
Glycine max
SE1820085
Mutator
M23
Gm12:10502365-10502672
AGTTATTGA
AGTTATTGACTAGTAAAGCATCGATTTCATCCTTAAATTATTACCTTCTTTCCTA

Secondary structure and sequence

TSD TIR

5'

3'

      T     CTA     G         CA        T     -    C       AATGATCCTTA    AAAAAATACAACTTAAGTAGTCTCGTAAGTATAGAAAATTATGCTAAGTAGTTCTCCAAATATTGAAACCTCCCTCAAATTAGTCCTTA
   AGT ATTGA   GTAAA CATCGATTT  TCCTTAAA TATTA CCTT TTTCCTA           AAGT                                                                                         
   ||| |||||   ||||| |||||||||  |||||||| ||||| |||| |||||||           ||||                                                                                         A
   TTA TAACT   TATTT GTAGTTAAA  AGGAGTTT ATAAT GGAA AAAGGAT           TCAT                                                                                         
CAG   T     ---     A         TC        C     A    -       -----------    CAGGGCTTTCGATATTTTGGTAAATTCATTAAGGACTTCATGACTTATAAGTAGTAAAATCAGGAATTCAACCAAATCAAATCATTTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820085

AGTTATTGACTAGTAAAGCATCGATTTCATCCTTAAATTATTACCTTCTTTCCTAAATGATCCTTAAAGTAAAAAATACAACTTAAGTAGTCTCGTAAGTATAGAAAATTATGCTAAGTAGTTCTCCAAATATTGAAACCTCCCTCAAATTAGTCCTTAAACTTTACTAAACTAAACCAACTTAAGGACTAAAATGATGAATATTCAGTACTTCAGGAATTACTTAAATGGTTTTATAGCTTTCGGGACTACTTAGGAAAAAGGATAATACTTTGAGGACTAAATTGATGATTTATTCAATTATTGAC

Copy Cancel