SE1820086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10414
  • Glycine max
  • SE1820086
  • Mutator
  • M4
  • Gm02:29631104-29631673
  • TAAAAATAA
  • AGGGTTAATTAATTTTTTAGTCTTCAAACATTGGGGTTTTGAATTTTTTGTCCTGAAACTATTTTTTTATAAAAATTTGGTCTCTAAAGAATTTGTTATTATTAAAAATAATTTTTGTCGTTAATGTCTTCTGTTAAGTGATGAAGTGTC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAATA            T  T             AT     -            T     G            ---TAT                                    A   A               -    C         A   AG    ATGAAATAA    GATTAAATGTCACGTGTATGTCATATACATGCCACTTATGTTTTATTATATTTAGGTAAATAATTTGAATATTATGTTATTAAAATACAAAAGGAAAAAAGAAGAGTCATTGTTTA
        AGGGTTAATTAA TT TTAGTCTTCAAAC  TGGGG TTTTGAATTTTT GTCCT AAACTATTTTTT      AAAAATTTGGTCTCTAAAGAATTTGTTATTATTAAA ATA TTTTTGTCGTTAATG TCTT TGTTAAGTG TGA  TGTC         GGCA                                                                                                                    
        |||||||||||| || |||||||||||||  ||||| |||||||||||| ||||| ||||||||||||      |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||| |||  ||||         ||||                                                                                                                     
        TCCCAATTAATT AA AATCAGGAGTTTG  ACCCC AAAACTTAAAAA CAGGA TTTGATAAAAAA      TTTTTAAACCAGGGATTTCTTAAACGGTAATAATTT TAT AGAAACGGCAATTAT AGAA ACAATTCAC ACT  ATAG         TGAA                                                                                                                    
AATAAAAA            C  T             AT     T            C     A            CAAAAT                                    C   C               T    -         A   CG    --------A    TACACCGGTGCTTATAGTGGTATTTAACATCTACTACTCCTACGTAACGACGAGGCGTAACGTCTAGAGGAATACCCACGAACAACATACAAGTACCCACGAACCTCGCAATCCTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End