SE1830092

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10420
  • Glycine max
  • SE1830092
  • hAT
  • Hat4
  • Gm20:53021-53657
  • ATCATTCT
  • TTAGGGGTGGGAATAGGCCAGGCCAGCTTACAGGGGCCT

Secondary structure and sequence

TSD    TIR
5'



3'
ATCATTC                 C        -   AC        ----AC  -  -    -  ACAT  ---     GACCTGGATTGGCCTATTTAATTAAAAGGCTAGGCTCAGACTTTTTTAAAAGACTTAGGCTTTTTAAAAAGCCTTATAAGCCTGATAGGCCGACCTATATATATATATATATATATATATTATTTTTTGGGTATAATTAATATTTTTTTTTAACTAGCAGATTTCATTCCTATAATTAAGTAAAACTTTAATTACAAGGTGTATTCTAGAGCAAATAAAAATCATATCCTATCATATCCTATTAT
       TTAGGGGTGGGAATAGG CAGGCCAG CTT  AGGGGCCT      GA CC TGGC CT    AA   AGCCT                                                                                                                                                                                                                                                     
       ||||||||||||||||| |||||||| |||  ||||||||      || || |||| ||    ||   |||||                                                                                                                                                                                                                                                     C
       AATCCCCACCCTTATCC GTTTGGTC GAA  TTTCCGGA      TC GA GCTA TT    GA   TCCGG                                                                                                                                                                                                                                                     
TCTTACT                 A        C   AC        CTCAGA  A  T    C  ---A  AAC     ACTCAGACCGGATATCAGATAGTTTCCGAAAATAAAACCGAACTGGACTGGAAAAATTTTCGGACCAGACCGGACTATCGGAAAAATGTTATTTAGAAAATAAATCCTTGCATTATCCTCTTAATTTTTTTTCCTTTGGACTATCTTTTTCCTATACAGTATCCTTGCATTTATACTATTCTATATTAAAAACATATTCTTGCATTAACCTATACTATCTATACTAAACATATCCTTGCATTATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End