Plant MITE

SE1830098

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10426
Glycine max
SE1830098
hAT
Hat4
Gm04:17204940-17205550
ATGAAGAT
ATTAGGGGTGGGAATAGGTCAGGCCGGCCTACAGGAGCCTACGACCTGGCCTAC

Secondary structure and sequence

TSD TIR

5'

3'

ATGAAG                           C  --AC   A    AC  -          ATAA     GAC    ACTGACCTATTTAATTAAAAGGTTAGGCTCAGACTTTTTTAAAAGCCTATTAAATTAAATAGACCAGACTTAGGCTTATTAAAAAGTCTTATAAGTCTGATAGACCGGCATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATTTTTTGGATACAATTAATTTTTTTTTAAACTATCAGACTTTGATTAACTTCTATTCCTATA
      ATTAGGGGTGGGAATAGGTCAGGCCGG CT    AGG GCCT  GA CCTGGCCTAC    AATCT   CTGA                                                                                                                                                                                                                                     
      ||||||||||||||||||||||||||| ||    ||| ||||  || ||||||||||    |||||   ||||                                                                                                                                                                                                                                     A
      TAATCCTCACCCTTATCCAGTCTGGTC GA    TTC CGGA  CT GGATCGGATG    TTAGA   TCCG                                                                                                                                                                                                                                     
TAGAAG                           T  AACT   -    --  C          CTAC     AAC    GACTCGGACCGGATATCGGATAGTTTCTGAAAATAAAGCCGAGCCAGACTATAAAAATTTTCAGACCGGACCGGACTATCGAAAAAATTTTCAGAAGAAGTCTTATTTATAAATTATAAAATACCTTATCCTTATATTATCCTTTCAATTTTTTTTCTTTCAGTTAGTTTTATTACTCCTTATATTTTCCTGTGTACTGAGTGTGGATTTAACATTGATTTCAAGAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830098

ATGAAGATTAGGGGTGGGAATAGGTCAGGCCGGCCTACAGGAGCCTACGACCTGGCCTACATAAAATCTGACCTGAACTGACCTATTTAATTAAAAGGTTAGGCTCAGACTTTTTTAAAAGCCTATTAAATTAAATAGACCAGACTTAGGCTTATTAAAAAGTCTTATAAGTCTGATAGACCGGCATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATTTTTTGGATACAATTAATTTTTTTTTAAACTATCAGACTTTGATTAACTTCTATTCCTATAATCAAGAACTTTAGTTACAATTTAGGTGTGAGTCATGTGTCCTTTTATATTCCTCATTATTTTGATTGACTTTCTTTTTTTTAACTTTCCTATTATATTCCTATTCCATAAAATATTAAATATTTATTCTGAAGAAGACTTTTAAAAAAGCTATCAGGCCAGGCCAGACTTTTAAAAATATCAGACCGAGCCGAAATAAAAGTCTTTGATAGGCTATAGGCCAGGCTCAGGCCTCAAAGATTCATCGTAGGCTAGGCTCAGGCCTTTCAAAGTCTGGTCTGACCTATTCCCACTCCTAATGAAGAT

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