SE1820100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10428
  • Glycine max
  • SE1820100
  • Mutator
  • M1
  • Gm01:26357235-26357570
  • TTTTAATGA
  • TTAATGAGGGTGTTGCTAGGTGCACCCAGCATTATTGCTGGTGCACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT    T                                           AA      TTAAAAATGCCAAAACTACCCCTGTGCTTTCTTTGCATTTGTGATGCGTGTGTGTGAGGGTGGTCCGTAAATCTTATGGATCAAGTTGATCCGTATGTTGATATTAAGCAC
   TTAA GAGGGTGTTGCTAGGTGCACCCAGCATTATTGCTGGTGCACCC  CATTTT                                                                                                               
   |||| |||||||||||||||||||||||||||||||||||||||||||  ||||||                                                                                                                
   AATT TTCCCACAACGATCCACGTGGGTCGTAATAACGACCACGTGGG  TCGTGA                                                                                                               
AGT    -                                           --      AGTCCCCTTTTTTGACTTTATGGGAACTAGACATTTGGAAATTCAACTAGACATTTTCCGTATGTTTAGTTGAACTAGGCATACGAAAAATGTCTAGTTCAACTAGGCATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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