SE1820107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10435
  • Glycine max
  • SE1820107
  • Mutator
  • M27
  • Gm11:11907732-11908365
  • TTTTCTCAA
  • AAGGTTAAATTACTCATTTGGTTCCTATAGTTTCATGATTTTTACCTTTTAGTCTCTATAGTTTGAAAATGATCTGTTTAGTTCCTATAGTTTACATTTTAATTCTCTTTTAGTTCTCGTAGTTTTGAAAGTAGTTTTTTTAGTCCTTATAATTTGTATTTTAATTCTCTTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTCTC              CA                 C           -C         C            A  -ATC    T               C                     TC       T      AG                 A                      TA    G AGTCCATATACTTTATATTTTAATTCTCTTTTAGTCCTTACCATCAAAATATGAGTAATATTATCAATTATTATTAGCTACAAAACTATTAGCAAATAATTCGTAACTAATTTATCGCAAGATAATTT
       AAGGTTAAATTACT  TTTGGTTCCTATAGTTT ATGATTTTTAC  TTTTAGTCT TATAGTTTGAAA TG    TGTT AGTTCCTATAGTTTA ATTTTAATTCTCTTTTAGTTC  GTAGTTT GAAAGT  TTTTTTTAGTCCTTATA TTTGTATTTTAATTCTCTTTTA  GTTT T                                                                                                                                
       ||||||||||||||  ||||||||||||||||| |||||||||||  ||||||||| |||||||||||| ||    |||| ||||||||||||||| |||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||| ||||||||||||||||||||||  |||| |                                                                                                                                G
       TTCCAATTTAATGA  AAACTAGGGATATTAAA TACTAAGAATG  AAAATCAGG ATATCAAACTTT AC    ACAA TCAAGGATATCAAAT TAAAATTAAGAGAAAATCAAG  CGTCAAA TTTTCA  AGAAAAATTAGGAATAT AAACATAAAATTAAGAGAAAAT  AGAA T                                                                                                                                
AACTCTT              AA                 A           TA         A            C  CAAA    -               A                     TA       -      CA                 C                      CA    - ATTAAATTTTCATTATAAAAATCAGGGATATTAAACATAAAATTAATGGAAAATCAAGAATGATGTTTTTTTATATATTTTTATTAATCGATGTTTAATCAATATTTAATAGTTGATAAAAAAACAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End