Plant MITE

SE1820109

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10437
Glycine max
SE1820109
Mutator
M16
Gm20:21268604-21269093
GACATCCGC
TGGCAAATTGACCAAAGCGGGTTCCTTTTAGAAACTTATTCCCAAAAGGGGTCTGTTTCGAAACTTTTTTCGGAGGGGGTCAGTTTTTGGAGGGATTTCGCCAGTGGAGTTGGCGAGTTGGACACGTGGCAGCAGCTGGGGGAACTCGCCAGTGGAGATGACAAGACACGGTCCACGTGGCGGGTTCCGCCATTTGTAATGGCAAAATGCTTTTTTTACGGAA

Secondary structure and sequence

TSD TIR

5'

3'

GACATCCGC                                                               C                                                      T                                         A A        T                               A            TAC    TTTTTTT   A     A
         TGGCAAATTGACCAAAGCGGGTTCCTTTTAGAAACTTATTCCCAAAAGGGGTCTGTTTCGAAA TTTTTTCGGAGGGGGTCAGTTTTTGGAGGGATTTCGCCAGTGGAGTTGGCGAGT GGACACGTGGCAGCAGCTGGGGGAACTCGCCAGTGGAGATG C AGACACGG CCACGTGGCGGGTTCCGCCATTTGTAATGGC AAATGCTTTTTT   GGAA       TTA ACTTG 
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||   ||||       ||| ||||| A
         GCCGTTTAACTGGTTTCGCCCAAGGAAAATCTTTGAATAAGGGTTTTCTCCAGACAAAGCTTT AAAAAGGCCTCCCCCAGTTAAAAACCTCCCTAAAGCGGTCACCTCAACCGCTCA CCTGTGCACCGTCGTTGATCCCCTTGAGCGGTCACCTCTAC G TCTGTGCC GGTGCACCGCCCAAGGCGGTAAGCATTACCG TTTACGAAAAAA   CCTT       AAT TGGAC 
CCGCCTACA                                                               A                                                      -                                         C C        C                               C            ---    -----TC   A     A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820109

GACATCCGCTGGCAAATTGACCAAAGCGGGTTCCTTTTAGAAACTTATTCCCAAAAGGGGTCTGTTTCGAAACTTTTTTCGGAGGGGGTCAGTTTTTGGAGGGATTTCGCCAGTGGAGTTGGCGAGTTGGACACGTGGCAGCAGCTGGGGGAACTCGCCAGTGGAGATGACAAGACACGGTCCACGTGGCGGGTTCCGCCATTTGTAATGGCAAAATGCTTTTTTTACGGAATTTTTTTTTAAACTTGAAACAGGTATAACTTTCCAAAAAAGCATTTCGCCATTACGAATGGCGGAACCCGCCACGTGGCCCGTGTCTCGCCATCTCCACTGGCGAGTTCCCCTAGTTGCTGCCACGTGTCCACTCGCCAACTCCACTGGCGAAATCCCTCCAAAAATTGACCCCCTCCGGAAAAAATTTCGAAACAGACCTCTTTTGGGAATAAGTTTCTAAAAGGAACCCGCTTTGGTCAATTTGCCGACATCCGCC

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