SE1820111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10439
  • Glycine max
  • SE1820111
  • Mutator
  • M6
  • Gm12:19476753-19477242
  • AATATATTT
  • AATATATTTGGCAAAATTGTAAATTTGGTCCCCCAGTTTATCTCTAGTTTTGGATTTGGTCCCCTAGTAATTTAATTCACGAATTTGGTCCTCCTATTATGTAAAATCGTGCAATGTTGGTCCCCCAGGCCACAATTGGATGTTGACCGTTAACAAGTGATGTTGACTGCCATGTGTCACATTCTTATTGGATGATAACTGCCACGCGTCATGTTCTGATTGG

Secondary structure and sequence

TSD    TIR
5'



3'
         T            AA                                                        C                  A                                         T                                      CA               AAC  C    C        C       ATGTCAAC  C      --     AAT
 AATATATT GGCAAAATTGTA  TTTGGTCCCCCAGTTTATCTCTAGTTTTGGATTTGGTCCCCTAGTAATTTAATTCA GAATTTGGTCCTCCTATT TGTAAAATCGTGCAATGTTGGTCCCCCAGGCCACAATTGGA GTTGACCGTTAACAAGTGATGTTGACTGCCATGTGTCA  TTCTTATTGGATGAT   TG CACG GTCATGTT TGATTGG        TC ATGAAA  GATGA   
 |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||   || |||| |||||||| |||||||        || ||||||  |||||    
 TTATATAA CCGTTTTAACGT  AAACCAGGGGGTCAAATAGAGGTCAAAACCTAAACCAGGGGGTCATTAAATTAAGT CTTAAACCAGGAGGATAA ACATTTTAGCACGTTACAACCAGGGGGTCTGGTGTTAACCT CAACTGGCAATTGTTCACTACAACTGACGGTGTACAGT  AAGAATAACCTACTA   AC GTGC CAGTACAA ACTAACC        AG TACTTT  TTATT   
T        -            AA                                                        C                  A                                         T                                      AC               CTA  A    A        T       --------  T      TG     ATG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End