Plant MITE

SE1820112

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10440
Glycine max
SE1820112
Mutator
M10
Gm08:37544671-37545209
CAAAAAATG
TGGGGACATGCTAGGTGCACCCAGCAACATTGCTGGTGCACCCAGCAATTAGGTGAATGGGCAAAATTGCCCTTGTATTAAAAAAATAATTCCTTCTTTCGGAAGAAGGTTCTTCCGGTAGAAC

Secondary structure and sequence

TSD TIR

5'

3'

CAAAAAA                     C          C                            C       C      A         -     C                          TA    AATTTA    ATCAGAAGAACCTTCTTCTGGAGAAGTTACCGGAAGAAGTTCTTCCGGTAACTTCTCCGAAAGAAGGTTCTTCCGGATGAACAATTTGTTTTACCGGAAGAACCTTCTTCCGGAGAAGCTACCGGAAGAAT
       TGGGGACATGCTAGGTGCACC AGCAACATTG TGGTGCACCCAGCAATTAGGTGAATGGG AAAATTG CCTTGT TTAAAAAAA TAATT CTTCTTTCGGAAGAAGGTTCTTCCGG  GAAC      TTCT                                                                                                                                   
       ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||  ||||      ||||                                                                                                                                   G
       ACCCCTGTACGATCCACGTGG TCGTTGTAAC ACCACGTGGGTCGTTAATCCACTTACCC TTTTAAC GGAACG AATTTTTTT ATTAA GAAGAAGGCTTTCTTCCAAGAAGGCC  TTTG      AAGG                                                                                                                                   
GTAAAAA                     A          A                            A       A      C         T     A                          --    -----A    CCTTCTTGTTAAACACAAGATGGCCTTCTTGGAAAAAGGCCTTCGAAAGGCCTTCTTGGAAGAAGGCCATCTTGTTAAATAAGAAGGCCTTCTTCCAAGAAGGCCTACTTGTTAAACAAGATGGCTTTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820112

CAAAAAATGGGGACATGCTAGGTGCACCCAGCAACATTGCTGGTGCACCCAGCAATTAGGTGAATGGGCAAAATTGCCCTTGTATTAAAAAAATAATTCCTTCTTTCGGAAGAAGGTTCTTCCGGTAGAACAATTTATTCTATCAGAAGAACCTTCTTCTGGAGAAGTTACCGGAAGAAGTTCTTCCGGTAACTTCTCCGAAAGAAGGTTCTTCCGGATGAACAATTTGTTTTACCGGAAGAACCTTCTTCCGGAGAAGCTACCGGAAGAATGTTCTTTCGGTAGAACAAATTGTTCATCCGGAAGAACCTTCTTCCGGAAGAATAAATTGTTCTACCGGAAGAAGGTTCTTCCGGAAAGCTTCCGGAAAAAGGTTCTTCCGGTAGAACACAAATTGTTCTTCCGGAAAGTTTCCGGAAGAACCTTCTTTCGGAAGAAGAAATTATTTTTTTTAACGCAAGGACAATTTTACCCATTCACCTAATTGCTGGGTGCACCAACAATGTTGCTAGGTGCACCTAGCATGTCCCCAAAAAATG

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