SE1820113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10441
  • Glycine max
  • SE1820113
  • Mutator
  • M1
  • Gm11:36691771-36692075
  • TCCCACCCA
  • GAGTGTTGCTAGGTGCACCCAGCATTATTGCTGGTGCACCCAGCATTCTTTGAAAATGGCAAAACTGCCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TCCCACCCATA                 C                      C      --  T      T    A  C       ACTAATTTCTTCCCT          C       A     CTTAAAAATCA       A            C    AA
           GAGTGTTGCTAGGTGCA CCAGCATTATTGCTGGTGCACC AGCATT  CT TGAAAA GGCA AA TGCCCCT               TATGGATCAA TTGATCC TAAGT           ACTTACG ATCAACTTGATC GTAA  
           ||||||||||||||||| |||||||||||||||||||||| ||||||  || |||||| |||| || |||||||               |||||||||| ||||||| |||||           ||||||| |||||||||||| ||||  G
           CTCACGACGATCCACGT GGTCGTAATAACGACCACGTGG TTGTGA  GG ACTTTT CTGT TT ATGGGGA               ATACCTAGTT AATTAGG ATTCA           TGAATGT TAGTTGAACTAG CATT  
  ATACCCACC                 T                      C      TT  T      -    C  T       ---------------          C       C     ATTAAAAATTC       C            A    CA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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