SE1850119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10447
  • Glycine max
  • SE1850119
  • PIF/harbinger
  • To19
  • Gm12:24019540-24019820
  • TAA
  • AGGTGGCGCTTGGTTTGAGTGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                        ATTTT            TT ATTTTCGAGATTTACAAAACATGTATCAAGAAGAAAGTACTCTAAGGTGCTACCTTGTTTTCACTTCTTCAGAAAAGGTTGGAAATGTTAATTTGTA
  AGGTGGCGCTTGGTTTGAGTGTTT     CTGAAAATAATT  C                                                                                                 
  ||||||||||||||||||||||||     ||||||||||||  |                                                                                                 G
  TCCACCGCGAACCAAACTCACAAA     GACAAAAGTAAA  A                                                                                                 
AA                        ----A            -- ATTTCTTTTATCTTTTGTTCCTACTTTTATACAAACGAATTTTAAATCTTTTGTAAAAGAGATCTTTATAAAAGTTTTCGTACAGCTTTTGACTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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