Plant MITE

SE1820120

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10448
Glycine max
SE1820120
Mutator
M28
Gm17:39998279-39998454
ATAAAAGAA
A

Secondary structure and sequence

TSD TIR

5'

3'

                 ATAAA    GAATAATTCTATATCCTCCTCCTACTCTTCCTAATTCCCTTGTATGGTAAGTATTCAATGTGCTTTATAT
                      AGAA                                                                      
                      ||||                                                                      T
                      AGGA                                                                      
AAGAAAATACTCATTATAACAT    GGATGTTTACAAAGATGATGGAATATTTTTTTCACAATTTACTTTTTCATTTACGTAAATTAGAGAACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820120

ATAAAAGAAGAATAATTCTATATCCTCCTCCTACTCTTCCTAATTCCCTTGTATGGTAAGTATTCAATGTGCTTTATATTTTCAAGAGATTAAATGCATTTACTTTTTCATTTAACACTTTTTTTATAAGGTAGTAGAAACATTTGTAGGAGGATACAATATTACTCATAAAAGAA

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