Plant MITE

SE1820121

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10449
Glycine max
SE1820121
Mutator
M1
Gm03:35973058-35973367
ATATCACAA
GAGTGTTGCTAGGTGCACCCAGCATT

Secondary structure and sequence

TSD TIR

5'

3'

ATATCACAA                   C      --  T   AAATGGCAAACTGTCCCTGCTAATTTCTCTCCTTACGGATCAAGTTGATCCGTAAAAGACTTACGGATCAACTTAGATCCGTAAGTCTTAAAAATCAACTTATGGATCAACTT
         GAGTGTTGCTAGGTGCACC AGCATT  CT TGA                                                                                                                 
         ||||||||||||||||||| ||||||  || |||                                                                                                                 G
         CTCACGACGATCCACGTGG TTGTAA  AC GAC                                                                                                                 
AACACTATA                   A      TA  -   CACATAAGTCGTGATTGGTGCTTTTCTGTTTTTATAGGGAATACCTAGTTCAACTAGGCATTCAATTAAAAATTCTGAATGCCTAGTTAAACTAGGCATTCAGAAAATACCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820121

ATATCACAAGAGTGTTGCTAGGTGCACCCAGCATTCTTTGAAAATGGCAAACTGTCCCTGCTAATTTCTCTCCTTACGGATCAAGTTGATCCGTAAAAGACTTACGGATCAACTTAGATCCGTAAGTCTTAAAAATCAACTTATGGATCAACTTGATCCATAAAAGACTTACGGATCAAATTGATCCGTAAGTCTTAAAAATTAACTTACGGATCAACTTGATCCATAAGGGATATTTTTGTCTTTTCGTGGTTAGTGCTGAATACACCAGCAATAATGTTAGGTGCACCTAGCAGCACTCATATCACAA

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