Plant MITE

SE1820124

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10452
Glycine max
SE1820124
Mutator
M1
Gm03:29864457-29864755
AAAGATGAA
GAGTGTTGCTAGGTGCACCCAACATTATTACTGGTGCAC

Secondary structure and sequence

TSD TIR

5'

3'

AAAGATGAA A                   A       A         CCAACATTTAATTA       AAAACTG  TCTGCACTTTTTTCGCATTTGTGATGGGTGTGTGTGAGGGTGATTCGTAAATCGTACGGATCAAGTTGATCCGTAAGGTTTC
         G GTGTTGCTAGGTGCACCCA CATTATT CTGGTGCAC              AAATACC       CC                                                                                  
         | ||||||||||||||||||| ||||||| |||||||||              |||||||       ||                                                                                   
         C CACAACGATCCACGTGGGT GTAATAA GACCACGTG              AGTAGTG       AA                                                                                  
AAGTAGAAA C                   C       C         --------------       -------  TTCCATTTTACTGCTTTTATGGGAACTAGGCATTCTGTAAATTCAACTAGGCATTTTCAGAATGCCTAGTTGAACTAGGCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820124

AAAGATGAAGAGTGTTGCTAGGTGCACCCAACATTATTACTGGTGCACCCAACATTTAATTAAAATACCAAAACTGCCTCTGCACTTTTTTCGCATTTGTGATGGGTGTGTGTGAGGGTGATTCGTAAATCGTACGGATCAAGTTGATCCGTAAGGTTTCTACGGATCAAGTTGATCCGTAAGACTTTTACGGATCAACTTAAATGTCTTACGGATCAAGGGTATTTTCGTCATTTTACCTTAAGTGATGAGTGCACCAGCAATAATGCTGGGTGCACCTAGCAACACCCAAAGATGAA

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