SE1820131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10459
  • Glycine max
  • SE1820131
  • Mutator
  • M6
  • Gm10:47204474-47204883
  • AATTATATA
  • TATATAGGCAAAATTGCATTTTTGGTCCCCCTAGTTGTCTCTAATTTTGATTTTAGTCCCCCTTTAAATTTATTCACGAATTTAGTCCTTCAATTATGTCCAATCCCATAAATGTGGTTCGTAAGTCCAGATTTTGACGTTGACTGTTCCAAAGGAACGTTGATTGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAT      ---                       C                              C                                      C       A            G             T             C A          G      -    -  CATTCATCGTCCAATTAGAACGTGGCA
   TATATA   GGCAAAATTGCATTTTTGGTCCC CTAGTTGTCTCTAATTTTGATTTTAGTCCC CTTTAAATTTATTCACGAATTTAGTCCTTCAATTATGT CAATCCC TAAATGTGGTTC TAAGTCCAGATTT GACGTTGACTGTT C AAGGAACGTT ATTGCC ACGT GA                           
   ||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||| | |||||||||| |||||| |||| ||                            
   ATATAT   CCGTTTTAACGTAAAAACCAGGG GATCAACAGAGGTTAAAACTAAAATCAGGG GAAATTTAAATAAGTGCTTAAATCAGGAAGTTAATACA GTTAGGG ATTTACACTAGG GTTCAGGTCTAAA CTGCAACTGACAA G TTCCTTGTAA TGATGG GTAC GT                           
         TAA                       A                              A                                      T       C            G             T             T C          G      G    A  GCAAGACTAACCTGTTACTTACAGTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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