SE1820136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10464
  • Glycine max
  • SE1820136
  • Mutator
  • M27
  • Gm02:50193786-50194176
  • AAAATAGAA
  • GGTTAAATTACACATTTGATCCCTATAGTTTCATGGTTTTTACCTTTTTAGTTCCTATAGTTTGAAAGTGGTCTTTTTAGTCCCTATAGTTTACATTTTAATTCTCTTTTAGTCCCTGTAATTTGAAAGTGTTCTTTTTAGTCCCTATAATTTACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATAGAA           A      A                        C                            C                                          C    -A          T                 A   A   TTTA     --     AATCCCTGTAATTTGA
         GGTTAAATTAC CATTTG TCCCTATAGTTTCATGGTTTTTAC TTTTTAGTTCCTATAGTTTGAAAGTGGT TTTTTAGTCCCTATAGTTTACATTTTAATTCTCTTTTAGTCC TGTA  TTTGAAAGTG TCTTTTTAGTCCCTATA TTT CAT    ATTCT  CTTTT                
         ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||||| ||| |||    |||||  |||||                 
         CCAATTTAATG GTAAAC AGGGATATCAAAGTACTAAGAATG AAAAATCAGGGATATCAAGCTTTTACCA AAAAATCAGGGATATCAAATGTAAAATTAAGAGAAAATCAGG ACAT  AAACTTTCAC AGAAAAATCAGGGATAT AAA GTA    TAAGA  GAAAA                
AAGATAAAA           A      C                        A                            A                                          A    CA          C                 C   -   ---C     AT     AATCAAGAATATCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3