SE1820138

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10466
  • Glycine max
  • SE1820138
  • Mutator
  • M1
  • Gm12:11570169-11570606
  • TTAAAAAAA
  • AAGGGTGTTGCTAGGTGCACCCAGCATTATTGCTAGTGCACCCAGTATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAA                     C            A      CC       -TTTAA    -  C     --TAT    G   TTTTTT   --  TTGTGATAGGTGTGTGTGAGGGTGGTCCGTAAATCGTACGGATCAAGTTGATCCATATGTTGATATTAAGCATACGGATCAACTTGATCCATAATCCTTTTACGGATGAAGTTGATCCGTGTTG
       AAGGGTGTTGCTAGGTGCACC AGCATTATTGCT GTGCAC  AGTATTT      AAAT AC AAAAT     CCCT TAT      CGC  CT                                                                                                                            
       ||||||||||||||||||||| |||||||||||| ||||||  |||||||      |||| || |||||     |||| |||      |||  ||                                                                                                                             
       TTCCCACAACGATCCACGTGG TTGTAATAACGA CACGTG  TCGTGAA      TTTA TG TTTTA     ACTA GGT      ATT  GA                                                                                                                            
AAAAAAA                     -            C      AA       TTTTAC    C  C     TAGAA    -   ------   CA  AAATTCAACTAAGCATTTTCCGAATGTCTAGTTGAACTAGACATTCTGAAGATACCTACTTCAACTAGGCACAATAAGGCATTTTCCGAATACCTAGTTCAACTAGGCATTCGGAAAATACCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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