Plant MITE

SE1830144

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10472
Glycine max
SE1830144
hAT
Hat3
Gm12:35518294-35518485
ATTTTGAT
GATCTATGAAGCACGGACACTTCAGCC

Secondary structure and sequence

TSD TIR

5'

3'

ATTTT              G      -T  -----   TTT      -   C  -    CGACACGCGTCCGTGTCAGTGTCCGACACCGACACGACACCC
     GATCTATGAAGCAC GACACT  CA     GCC   TGTCGT GTC GG TGTC                                          
     |||||||||||||| ||||||  ||     |||   |||||| ||| || ||||                                          G
     TTAGATACTTCGTG TTGTGG  GT     TGG   CCTGTG TGT CC GTGC                                          
TAGTT              G      CT  GTCTA   ---      C   G  T    CTGTGCACCTGTGGACATTACAGGTTTTATATCTTGCATCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830144

ATTTTGATCTATGAAGCACGGACACTTCAGCCTTTTGTCGTGTCCGGTGTCCGACACGCGTCCGTGTCAGTGTCCGACACCGACACGACACCCGTACTACGTTCTATATTTTGGACATTACAGGTGTCCACGTGTCCGTGTCCGTGTCGTGTCCGGTATCTGTGTCGGTGTTGGTGCTTCATAGATTTTGAT

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