SE1820147

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10475
  • Glycine max
  • SE1820147
  • Mutator
  • M10
  • Gm18:6280379-6280881
  • TACCTTGTT
  • GTTGGGACATGCTAGGTGCACCCTGCAACATTGCTGGTACACCCAGCAATTAGGTGAATGAGCAAAATTGCCCTTGTGTTAAAAAAATAATTCATTCTTTCGGAAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TACCTT  T                    T              A                     A         C                     CA      C      AAGTTAT         -- CAATTTATTCTACCAGAAGAACCTTCTTCTGGAGAAGCTATCGGAAGAAGTTCTTCCGATAACTTCTCCGGAAGAAGGTTCTTCCAGATGAACAATTTGTTCTACCGGAAGAACCTTCTTCCGG
      GT GGGACATGCTAGGTGCACCC GCAACATTGCTGGT CACCCAGCAATTAGGTGAATG GCAAAATTG CCTTGTGTTAAAAAAATAATT  TTCTTT GGAAGA       TCTGGTAGA  A                                                                                                                            
      || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||| ||||||       |||||||||  |                                                                                                                             
      CA CCCTGTACGATCCACGTGGG CGTTGTAACGACCA GTGGGTCGTTAATCCACTTAC CGTTTTAAC GGAACGCAATTTTTTTATTAA  AAGAAG CCTTCT       TGTTAAACA  A                                                                                                                            
TTGTTC  T                    T              C                     C         A                     AG      A      -------         CA GATGGCCTTCTTGGAAGAAGGCTTTCGAAAAGCCTTCTTGGAAGAAGGCCTTCTTGTTAAACACAAGATTGCCTTCTTGGAAGAAAGCCTTTCAAAGGCCTTTTTGGAAGAAAGCTTCTTTGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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