SE1820152

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10480
  • Glycine max
  • SE1820152
  • Mutator
  • M32
  • Gm19:12255653-12256057
  • TTATTTCTA
  • AGGCTTAAATATGTTTTTGATCTCTAATAAATACCCAATTTTTGTGTTTACTCCATAATAAATTTTTGTTTTGCATTGAATCCCTAATAAAATAACATTTTTGTTTTTTATTCTTGATATTTGGTTTTAATCCCTAATAAAATAGAAAATTTTGTGTTCGCTTCCTAATAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTTCT                                 C        T      A  -  A                   AT   A  C              T           A  C          G                 A   A            C     CTA      TAGCAA T       AA   CT
        AGGCTTAAATATGTTTTTGATCTCTAATAAATA CCAATTTT GTGTTT CT CC TAATAAATTTTTGTTTTGC  TGA TC CTAATAAAATAACA TTTTGTTTTTT TT TTGATATTTG TTTTAATCCCTAATAAA TAG AAATTTTGTGTT GCTTC   ATAAAT      C TTTGTTA  AGT  
        ||||||||||||||||||||||||||||||||| |||||||| |||||| || || |||||||||||||||||||  ||| || |||||||||||||| ||||||||||| || |||||||||| ||||||||||||||||| ||| |||||||||||| |||||   ||||||      | |||||||  |||   
        TCCGAATTTATACAAAAGCTAGGGATTATTTAT GGTTAAAA CGTAAA GA GG ATTATTTAAAAACAAAACG  ACT AG GATTATTTTGTTGT AAAACAAAAAA AG AACTGTGAAT AAAATTAGGGATTATTT ATC TTTAAAACACAA TGAGG   TATTTA      G AAACAAT  TTA  
ATCTTTAT                                 A        -      C  A  -                   CT   C  A              T           C  A          A                 A   A            A     TAC      TAAAGG T       AA   TG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End