SE1820156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10484
  • Glycine max
  • SE1820156
  • Mutator
  • M34
  • Gm20:36751025-36751420
  • ATAATAATA
  • GGCTTAATAAAAAAAATAGTC

Secondary structure and sequence

TSD    TIR
5'



3'
ATAATAATA        AAA          CTCC         -CAAC        CA -    CC                          CCG  CC   -CAATCTCAC           C                    T   -A             A       T  G         CAT    -  -CAT   C
         GGCTTAAT   AAAAATAGTC    TATTTATCC     TACTAAAT  G CCTC  TATAATTTAATTCACCAATTGAGTTT   TT  TTT          TATTTGAGTTT CAATCTTAAAATTGGACGTT ACT  TTAATGGGTAACG TGATTGT AC TGTCATAAT   GTTG GA    TGA 
         ||||||||   ||||||||||    |||||||||     ||||||||  | ||||  ||||||||||||||||||||||||||   ||  |||          ||||||||||| |||||||||||||||||||| |||  ||||||||||||| ||||||| || |||||||||   |||| ||    ||| T
         CCGAATTA   TTTTTATTAG    ATAAATAGG     GTGATTTA  C GGAG  ATATTAAATTAAGTGGTTAACTCAGA   AA  AAA          ATAAACTCAGA GTTAGGGTTTTAACCTGTAA TGA  GATTACCCATTGT ACTGACG TG GCAGTATTA   TAAT CT    ACT 
ATAATAATA        ACG          AAAA         ATTAA        AC A    -A                          AAA  AA   AACTAAACTA           A                    T   AC             A       -  -         TCC    T  ACAC   A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End