Plant MITE

SE1820159

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10487
Glycine max
SE1820159
Mutator
M18
Gm03:37873259-37873456
AAATTTAAG
GGTCTTGCTAACCAGTGCCCTTAGGGCATTGGTTAAGAAACTAAAAGGAGAG

Secondary structure and sequence

TSD TIR

5'

3'

AAATTTAAG   -CT       C    C        C          A              -TATTTACTG   A   -       GAGCATAAAAAAAG
         GGT   TGCTAAC AGTG CCTTAGGG ATTGGTTAAG AACTAAAAGGAGAG          TGG GAT CATAAGA              
         |||   ||||||| |||| |||||||| |||||||||| ||||||||||||||          ||| ||| |||||||              T
         CCG   ACGATTG TCAC GGAATCCC TAACCAATTC TTGATTTTCCTCTT          ACC CTA GTGTTTT              
 AATTTAAA   TTT       A    A        T          C              TCCAAAAATA   -   C       AACACAACGGGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820159

AAATTTAAGGGTCTTGCTAACCAGTGCCCTTAGGGCATTGGTTAAGAAACTAAAAGGAGAGTATTTACTGTGGAGATCATAAGAGAGCATAAAAAAAGTCATGGGCAACACAATTTTGTGCATCCCAATAAAAACCTTTCTCCTTTTAGTTCCTTAACCAATTCCCTAAGGACACTAGTTAGCATTTGCCAAATTTAA

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