SE1830160

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10488
  • Glycine max
  • SE1830160
  • hAT
  • Hat3
  • Gm12:22343355-22343540
  • GTACCTAT
  • TATCTATGAAGCACAGACACT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTACC              A      CCAGCTCCT -     GTCCGGTGTCTGAGACGCGTCCGTGTCAGTGTCTGACACCGACACGACACCCGTAC
     TATCTATGAAGCAC GACACT         T GTCGT                                                        
     |||||||||||||| ||||||         | |||||                                                         
     ATGGATACTTCGTG CTGTGA         C GTACA                                                        
TATCC              G      --------- T     TGTTGCCTGTGCTGTGCCTGTGCACCTGTGGATATTACAGATTTAATATCTTGCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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