Plant MITE

SE1820168

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10496
Glycine max
SE1820168
Mutator
M39
Gm10:27665551-27665781
TTTAATAAT
TTAATAATGTGTTAATGGTGTTTTTAGCCCCTGAAAAATGAGTCATTTTGGTTTTAGTCCACGACTTTCAAAACCATAAGTTTTCATCCC

Secondary structure and sequence

TSD TIR

5'

3'

T   A   T T                 CCC   A             -           -  AC      C          G          --------   CAGTGTTAGTTTTATGG
 TTA TAA G GTTAATGGTGTTTTTAG   CTG AAAATGAGTCATT TTGGTTTTAGT CC  GACTTT AAAACCATAA TTTTCATCCC        CTA                 
 ||| ||| | |||||||||||||||||   ||| ||||||||||||| ||||||||||| ||  |||||| |||||||||| ||||||||||        |||                  
 AAT ATT C CAATTACCATAAAAGTC   GAC TTTTACTCAGTAG AACCAAAATCA GG  CTGAAA TTTTGGTATT AAAAGTAGGG        ACT                 
T   A   T C                 TAA   C             G           A  -A      A          A          TTATAAAA   TTATGGGTTTGAAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820168

TTTAATAATGTGTTAATGGTGTTTTTAGCCCCTGAAAAATGAGTCATTTTGGTTTTAGTCCACGACTTTCAAAACCATAAGTTTTCATCCCCTACAGTGTTAGTTTTATGGAATAAAGTTTGGGTATTTCAAAAATATTGGGATGAAAAATTATGGTTTTAAAAGTCAGGAACTAAAACCAAGGATGACTCATTTTCCAGAATCTGAAAATACCATTAACCCTTTAATAAT

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