SE1810172

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10500
  • Glycine max
  • SE1810172
  • Tc1/Mariner
  • St8
  • Gm09:43670363-43670782
  • TA
  • TACTCCCTCTTGTCATATATATATTGGTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
          T   ATA              TTTCAATT    T TTAAGACTAAGGAAGGAAAGTTAAGTCATTAAATATGTCTGAAAATAAAATAAGTTTTCAATTATACTCTAACATAATTACATATTCAACTAATTTCACTAATAATTAATTAAATGCTTAGTCTAAATTATTCTCTCGCGTTCTTTCTCTTCCACACCATTATTAATATT
TACTCCCTCT GTC   TATATATTGGTCAC        GAAT A                                                                                                                                                                          
|||||||||| |||   ||||||||||||||        |||| |                                                                                                                                                                          C
ATGAGGGAGG TAG   ATATATAACCAGTG        TAAG A                                                                                                                                                                          
          C   --G              --------    - TTTTTCTTATGAACCAGGATAAATATTCAGTGGTTGATTGGATAATTATTATTAAAAAGTTAATACAAGAAATATGATAAGAGTTATGAAATAATAATCCCTTCTCTTTATAACTCTAACTTCCAACAATAACCAGGTATAGGTAACTACCTCTATCATCTCATTATCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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