SE1820173

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10501
  • Glycine max
  • SE1820173
  • Mutator
  • M1
  • Gm07:16583057-16583515
  • TTAGAATTT
  • GAATTTGGGTGTTGCTAGGTGCACTCAGTATTATTGCTGGTGCACCCAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTA      ---                 C                           CTT      AAATGACGAATATACCTTTGATCCGTAAGTCATCTAAGTTGATTCGTAAAAGTCTTACGGATCAACTTGATCCATAGAAACCTTACAAATCAACTTGGTCCATAAGCCTTTTACGGAACAATACGGATCAACATAATCCGTAAGCTTTTTACGGATCAACTTGTTCCG
   GAATTT   GGGTGTTGCTAGGTGCA TCAGTATTATTGCTGGTGCACCCAACA   AAGGTA                                                                                                                                                                        
   ||||||   ||||||||||||||||| |||||||||||||||||||||||||||   ||||||                                                                                                                                                                         
   TTTAAG   CTCACAACGATCCACGT GGTCGTAATAGCGACCACGTGGGTTGT   AAATTA                                                                                                                                                                        
         ATT                 A                           ---      ATTTTATGATTTTGACAGGGACGCGAAAAAAGTGTAAACACTACTCACACACACTCCCACTAGGCATTTAGCATGCCTAGTTCAACTAGGCATTCTAACTATGCCTAGTTGAACTAGGCATTCGGAAAATGCCTTGTTATGCCTAGTTGTACTAGGCATTTTCAGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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