Plant MITE

SE1820177

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10505
Glycine max
SE1820177
Mutator
M3
Gm18:42972954-42973203
TTATTATTT
GGTTTAATTACTCATTTGGTCTCTATAGTTGCAAAAACTTTAACTTTTAGTCCC

Secondary structure and sequence

TSD TIR

5'

3'

TTATTATTT          C                      A       AA           CACACATAC   T    A  -        --              -CTC           AT    CA
         GGTTTAATTA TCATTTGGTCTCTATAGTTGCA AAACTTT  CTTTTAGTCCC         AAT TTTA TA CTTTTTAT  TCCCTACACATATC    TTAATCCCTTT  GTCC  
         |||||||||| |||||||||||||||||||||| |||||||  |||||||||||         ||| |||| || ||||||||  ||||||||||||||    |||||||||||  ||||  T
         CCAAATTAAT AGTAAACCAGAGATATCAATGT TTTGAAA  GAAAATCAGGG         TTA GAAT GT GGGGAATA  AGGGATGTGTATGG    AATTAGGGAAA  CAGG  
TTTATTAAT          T                      A       GG           ---------   T    C  A        TC              TAAA           AT    TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820177

TTATTATTTGGTTTAATTACTCATTTGGTCTCTATAGTTGCAAAAACTTTAACTTTTAGTCCCCACACATACAATTTTTAATACTTTTTATTCCCTACACATATCCTCTTAATCCCTTTATGTCCCATGTGGACTAAAAGGGATTAAAAATGGTATGTGTAGGGACTATAAGGGGATGCTAAGTATTGGGACTAAAAGGGAAAGTTTATGTAACTATAGAGACCAAATGATTAATTAAACCTAATTATTT

Copy Cancel