SE1820185

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10513
  • Glycine max
  • SE1820185
  • Mutator
  • M1
  • Gm03:33392558-33392860
  • TTCTTTTTG
  • GGAGTGTTGCTAGGTGCACCCAGCATTATTGTTGGTGCACCAGCTTTCTTTGAAAATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTTTTT         C                             -     --TTT  T      T  CAAAAAT       GCTAATTTCTCCCGT             G                    AAA                        A
        GGAGTGTTG TAGGTGCACCCAGCATTATTGTTGGTGCA CCAGC     CT TGAAAA GA       TGCCCCT               TACGGATCAAGTT ATTCGTAAGTTGATTTTTAA   TTACGGATCAACTTGATCTGTAAA 
        ||||||||| ||||||||||||||||||||||||||||| |||||     || |||||| ||       |||||||               ||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||| A
        TCTCACGAC ATCCACGTGGGTTGTAATAACAACCACGT GGTTG     GG GCTTTT CT       ATGGGGA               ATGCCTAGTTCAA TAGGTATTCAATTAAAAATT   AATGCCTAGTTGAACTAGGCATTT 
GTTTTTCT         A                             A     TGATT  T      -  -ATCTTT       ---------------             A                    CTG                        A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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