SE1820186

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10514
  • Glycine max
  • SE1820186
  • Mutator
  • M10
  • Gm02:45372939-45373300
  • CTATATCTT
  • GGGACATGCTAGGTGCACCCAAGCAACATTACTGGTGCATCCAGTAATTAGATGAATGAGCAAAATTGTCCTTATATCAAAGTTTGAAAATAAAACTAATTTAAAAAAAAATAATTTCTTCCTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTATATCTT                     A                             A      A              ATA                   C                     C  C        -   C   C       GTTCTTCTTCCAGTAACTTCTCTGGAAGA
         GGGACATGCTAGGTGCACCCA GCAACATTACTGGTGCATCCAGTAATTAG TGAATG GCAAAATTGTCCTT   TCAAAGTTTGAAAATAAAA TAATTTAAAAAAAAATAATTT TT CTCCGGAG AAG TAT GGAAGAA                             
         ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||| ||| |||||||                              
         CCCTGTACGATCCACGTGGGT CGTTGTAATGACCACGTGGGTCGTTAATC ACTTAC CGTTTTAACAGGAA   GGTTTCAAACTTTTATTTT ATTAAATTTTTTTTTATTAAG AA GAGGCCTT TTC CAA GAAGGCC                             
TTCTATATC                     -                             C      C              CAC                   A                     A  A        G   -   -       ATCTTATTTAACAAGTAGGTCTTCTTGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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