Plant MITE

SE1830187

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10515
Glycine max
SE1830187
hAT
Hat11
Gm13:24133751-24133914
ATTTATTG
CAAGGTTTTGAA

Secondary structure and sequence

TSD TIR

5'

3'

ATTTATTG            ATACGGTCC   A     T          CA  G  -  TGTTTTTGAGGTGTCTGTGCCTCATTGGT
        CAAGGTTTTGAA         GCA TTGCA GTTTCGGCCA  AT TT AA                             
        ||||||||||||         ||| ||||| ||||||||||  || || ||                              
        GTTCCAAAATTT         CGT AACGT CAAAGCAGTG  TA AA AG                             
GTTATTTA            -------AA   C     -          --  -  G  CTATAACGTTCTTTAACGCCTGTTTACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830187

ATTTATTGCAAGGTTTTGAAATACGGTCCGCAATTGCATGTTTCGGCCACAATGTTAATGTTTTTGAGGTGTCTGTGCCTCATTGGTCACATTTGTCCGCAATTTCTTGCAATATCGAGAAATGTGACGAAACTGCAACTGCAATTTAAAACCTTGATTTATTG

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