SE1820189

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10517
  • Glycine max
  • SE1820189
  • Mutator
  • M12
  • Gm09:6988070-6988392
  • TTAATTGTA
  • TAATTGTAGGTTTAATTACCCATTTAGTCCCTATAGTTTTCAAACTTATCCCTTTTAGTCCCTTGGTTAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
 T      T       A              C                              C  -           T   G TTTTAGTCCCTGAAGTTTAATAAGTGGATTTTTTACTCCCTGAAGTTTACATTTTAATTTCCAAAAGTTCTCTGCCGTTAA
  TAATTG AGGTTTA TTACCCATTTAGTC CTATAGTTTTCAAACTTATCCCTTTTAGTC CT TGGTTAATAAG GGA T                                                                                 
  |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| ||| |                                                                                  
  GTTAAT TCCAAAT AATGGGTAAATCAG GATATCAAAGGTTTGAATAGGGAAAATCAG GA ATCAATTATTC ACC T                                                                                 
AT      -       C              A                              A  T           -   - AAAAAATTAGGGACTTCAAATGTAAAATTAAGGGTTTTCCAGAGACGGCAATTTTAAGAAATTGATTGCCTCAATTTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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