Plant MITE

SE1820197

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10525
Glycine max
SE1820197
Mutator
M41
Gm05:328723-328961
ATATCAATG
GAGGAGTGCTAGCGACACTCTGTTTATGATATTCTCTCTATGATTGGTTAGAATTTATTGAAAATCACCAATTTTGATAAGTTTTCTTTCTCATTTAAT

Secondary structure and sequence

TSD TIR

5'

3'

ATATCAATG                     G   AT        C   ---                            CC       A  A     C       T     ATAAA  AGG
         GAGGAGTGCTAGCGACACTCT TTT  GATATTCT TCT   ATGATTGGTTAGAATTTATTGAAAATCA  AATTTTG TA GTTTT TTTCTCA TTAAT     TC   
         ||||||||||||||||||||| |||  |||||||| |||   ||||||||||||||||||||||||||||  ||||||| || ||||| ||||||| |||||     ||    
         CTCCTCACGGTCGTTGTGAGA AAA  CTATGAGA GGA   TACTAACCAATCTTAAATAATTTTTAGT  TTAAAAC AT CAAAA AAAGAGT AATTA     AG   
GTAACTATA                     G   AC        A   CAC                            AA       C  C     T       T     CAAAG  AGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820197

ATATCAATGGAGGAGTGCTAGCGACACTCTGTTTATGATATTCTCTCTATGATTGGTTAGAATTTATTGAAAATCACCAATTTTGATAAGTTTTCTTTCTCATTTAATATAAATCAGGAGAGAGAAACATTAATTGAGAAATAAAACCTACCAAAATTAATGATTTTTAATAAATTCTAACCAATCATCACAGGAAGAGTATCCAAAAGAGAGTGTTGCTGGCACTCCTCATATCAATG

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