SE1860199

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10527
  • Glycine max
  • SE1860199
  • Micron
  • Mim1
  • Gm11:7821013-7821244
  • TATATAT
  • TATATATA

Secondary structure and sequence

TSD    TIR
5'



3' 
        GAGAGA   A   A AGCAGA  C   C          T                      C                        A  C         T   A  T
TATATATA      GAG GAG G      GA CCA TTACTCCAAG GTAACTTTTTTAGAGTTACTCC CATCCTCATCATTCATTTTCTTAA AT TAATGGTTG AAT AG 
||||||||      ||| ||| |      || ||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| ||| || A
ATATATAT      CTC CTC C      CT GGT AATGAGGTTC CATTGAGAAAATCTCAATGAGG GTAGGAGTGGTAAGTAAAAGAATT TA ATTACCAAT TTA TC 
        -ACACA   -   - ------  A   A          T                      A                        C  C         T   A  A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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