Plant MITE

SE1830207

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10535
Glycine max
SE1830207
hAT
Hat4
Gm20:16788798-16789380
CAGGCGGA
GCGGATAGGGGTGGGAATAGGCCAGGCCG

Secondary structure and sequence

TSD TIR

5'

3'

CAG  GGA                                -  TGAAAGGCCTGAGCCTAGCCTACGATGAATCTTTGAGGCCTGAGCCTGGCCTATAGCCTATCAAAGGCTTTTATTTTGGCTCATCCTGACCTTTTTAAAAGTTTGGCCTAGCCTGATAGCCTTTTTAAAGGAAAAGAAAAGTCAATAAAAAATAATGAGAAATATAAAAGGGCACATGACTCACACCCTAAATTATAATTAAAGTCTTACTTGATTATAGGAATAGAAGTTATGGAGCAGTAATGTGTA
   GC   TAGGGGTGGGAATAGGCCAGGCCGGGCCAGGC TT                                                                                                                                                                                                                                                         
   ||   |||||||||||||||||||||||||||||||| ||                                                                                                                                                                                                                                                          
   CG   ATTCCCACCCTTATCCGGTCTGGCCGGATGTC CC                                                                                                                                                                                                                                                         
AGG  GAC                                C  GGATGCTGGACCGGATGTATTTCGGACCAGACTTGACCGGATAAATTAATTTTCCAATCCGAGTCTGAAAAAATTTTCGGATTATTTAATTTATCTGGTCCGAATCCGAATAATTTTTCGGAATATTTGGACTATCAGGCCGGATATATATATATATGAGTATATGAATATAATAAAAAACCCATGGTTATATATTATAATAAAAAACCTATGTTAATTAAAAAAAAGAACTTTGATAGTCTGAAACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830207

CAGGCGGATAGGGGTGGGAATAGGCCAGGCCGGGCCAGGCTTTGAAAGGCCTGAGCCTAGCCTACGATGAATCTTTGAGGCCTGAGCCTGGCCTATAGCCTATCAAAGGCTTTTATTTTGGCTCATCCTGACCTTTTTAAAAGTTTGGCCTAGCCTGATAGCCTTTTTAAAGGAAAAGAAAAGTCAATAAAAAATAATGAGAAATATAAAAGGGCACATGACTCACACCCTAAATTATAATTAAAGTCTTACTTGATTATAGGAATAGAAGTTATGGAGCAGTAATGTGTAATCAAAGTCTGATAGTTTCAAGAAAAAAAATTAATTGTATCCAAAAAATAATATTATATATTGGTACCCAAAAAATAATATAAGTATATGAGTATATATATATATAGGCCGGACTATCAGGTTTATAAGGCTTTTTAATAAGCCTAAGCCTGGTCTATTTAATTTATTAGGCTTTTAAAAAAGTCTGAGCCTAACCTTTTAATTAAATAGGCCAGTTCAGACCAGGCTTTATGTAGGCCAGGTCGTAGGCCCCTGTAGGCCGGTCTGGCCTATTCCCACCCTTACAGGCGGA

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