SE1820208

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10536
  • Glycine max
  • SE1820208
  • Mutator
  • M1
  • scaffold_22:960764-961135
  • TAATAGAAT
  • GGGTGTTGCTAGGTGCACCCAGTATTATTGCTGGTGCACCTAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAGAAT                 C            C              -C      GGAAAAGACTGAAATACCCTTAATCCGTAAGTCTTTTATGGATCAACTTGATCTGTAAATCTTTTACGGATCAACTTGATCCATAAGTCTTTTACGAATCAAGTTGATCCGTATGCGCTTAATA
         GGGTGTTGCTAGGTGCA CCAGTATTATTG TGGTGCACCTAGCA  TTAAGG                                                                                                                            
         ||||||||||||||||| |||||||||||| ||||||||||||||  ||||||                                                                                                                            T
         CCCACAACGATCCACGT GGTTATAATAAC ACCACGTGGGTTGT  AAAATT                                                                                                                            
TAAGATAAT                 A            C              AA      TTTACAGTTTTAATAGGAACATGAAAGAAGCGTAAACACTACCCACATGCACTCCCACCAGGCATTTAGCTTGCCTAGTTCAACTAGGCATTCCAATTATACCTAGTTCAACTAGGCATACAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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