SE1820216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10544
  • Glycine max
  • SE1820216
  • Mutator
  • M16
  • Gm03:3044020-3044229
  • TAATTAAAA
  • AGGCAAATTGACTAAATTAGGTTCCTTTTAGAAACTTATTCTTAAAAGGAGGCTGTTTTGAAACTTTTTCCTGGAGACTCGCCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTAAA                T       C                        A  C                   ------------------  A           GG
        AGGCAAATTGACTAAA TAGGTTC TTTTAGAAACTTATTCTTAAAAGG GG TGTTTTGAAACTTTTTCCT                  GG GACTCGCCAAT  
        |||||||||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||||||                  || |||||||||||   
        TCCGTTTAACTGGTTT ATCCGGG AAAATCTTTGAATAAGGATTTTCC CC ACAAAACTTTGAAAAAGGA                  CC CTGAGCGGTTA  
AAAATTAA                C       A                        C  A                   CAGCCCAGACAAAGACCT  C           GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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