SE1830217

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10545
  • Glycine max
  • SE1830217
  • hAT
  • Hat4
  • Gm18:23616301-23616765
  • TAAGGGTG
  • GGGTGGGAATAGACCAGATTAGGCTT

Secondary structure and sequence

TSD    TIR
5'



3'
TAA            A       A     TAAAA      A -   A      G     T   TAA         C        ---------------     ATCAAAGGCTTTTATTTTGGCTCGGCTTGACCTTTTTAAAAGCCTAGCCTAGCCTGATAGCCTTTTTAAAAGTCTTCTTCACATTAAATATTTCTTTGATCTAGAGTAGGAACATAATAGGAAAGTTAATGGAAAATGA
   GGGTGGGAATAG CCAGATT GGCTT     GGCCTG G CCT GCCTAT ATGAA TTT   GGCCTGAGC TGGCCTAT               AGCCT                                                                                                                                           
   |||||||||||| ||||||| |||||     |||||| | ||| |||||| ||||| |||   ||||||||| ||||||||               |||||                                                                                                                                           A
   CTCACCCTTATC GGTCTGG CCGGA     CCGGAT C GGA TGGGTG TATTT GGA   TCGGACTTG ACCGGATA               CCGAG                                                                                                                                           
ATG            C       -     TGTCC      G T   C      -     C   ---         -        AATTAATTTTCTAAT     TTCGAAAAAATTTTCGGATAATTTAATTTATCTGGACCGAATCCGAACAATTTTTCAGAAATTAATGTTAAATCCACACTCAGTACACAGGAAAATATAATGAGTAATAAAAATAACAGAAAAGATAAGAACAATTGCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End