SE1820220

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10548
  • Glycine max
  • SE1820220
  • Mutator
  • M6
  • Gm10:12712380-12712860
  • TAGATTAAA
  • AGGCAAAATTGCATTTTTGGTTCCCCAATTTGTCTCCAATTTCGATTTTGGTCCCCCTTTAAAATTATTGACGAATTTTGTCCTCCTATTTTATCTAATCACGCAATCTTGGTCCTCCAATCCAGAATTGGATGTTGACGGTTACAAAGGAATGTTGACTGTCACGTGTCACGTTCTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGATTAA        T  C           C                    AT      C                            CC        T               C                              CG                                        TGGATGA                      CAT   --  GTCGAATCCATGGAAGATG
        AGGCAAAA TG ATTTTTGGTTC CCAATTTGTCTCCAATTTCG  TTTGGT CCCCTTTAAAATTATTGACGAATTTTGT  TCCTATTT ATCTAATCACGCAAT TTGGTCCTCCAATCCAGAATTGGATGTTGA  GTTACAAAGGAATGTTGACTGTCACGTGTCACGTTCTTAT       TGACTGTCATGTGTCATGTTCT   TGG  AT                   
        |||||||| || ||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||  |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||   |||  ||                    
        TCCGTTTT AC TAAAAACCAGG GGTTAAACAGAGGTTAAAGC  AAACTA GGGGAAATTTTAATAACTGCTTAAAACA  AGGATAAA TAGATTAGTGCGTTA AACCAGGGGGTTAGGTTTTAACCTGCAACT  CAATGTTTCCTTACAACTGGCGGTGTACAGTGCAAGAATA       ACTGACAGTGCATAGTACAAGA   ACC  TT                   
AAATTAGA        T  A           A                    -C      A                            AA        -               A                              CA                                        -------                      CCA   GG  ACTGTTATTGTTACGTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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