Plant MITE

SE1820236

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10564
Glycine max
SE1820236
Mutator
M1
Gm04:43005875-43006208
TTACCATTT
GGGTGTTGCTAGGTGCATCCAGCATTATTGCTGGTGCAACCAGCA

Secondary structure and sequence

TSD TIR

5'

3'

TTACCATTT                                      A  -    CTTAAGAT    GA     ATA   T  ---------A   ATAAGCCTTTTAACTTGATCCGTAGAAGCCTTACGGATCAAGTTGATCCGTATGCTTAATATTAACATACGGATCA
         GGGTGTTGCTAGGTGCATCCAGCATTATTGCTGGTGCA CC AGCA        AAAT  CAAAA   CCC TG          TCC                                                                            
         |||||||||||||||||||||||||||||||||||||| || ||||        ||||  |||||   ||| ||          |||                                                                            A
         CCCACAACGATCCACGTGGGTCGTAATAACGACCACGT GG TCGT        TTTA  GTTTT   GGG AC          CGT                                                                            
TTTACCATT                                      -  A    AAAAGATT    TG     GAC   T  ACAAAAAAAG   AAACACTACCCACACGTACTCCTACCAGGTATTTAGCATGCCTAGTTCAACTAGGCATTTCAACTATGCTTAGTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820236

TTACCATTTGGGTGTTGCTAGGTGCATCCAGCATTATTGCTGGTGCAACCAGCACTTAAGATAAATGACAAAAATACCCTTGATCCATAAGCCTTTTAACTTGATCCGTAGAAGCCTTACGGATCAAGTTGATCCGTATGCTTAATATTAACATACGGATCAACTTGATTCGTATCAACTTTACGGATCAACTTGATCCGTACGATTTATGGACCATCCTCATGCACACCCATCACAAATGCGAAAAAAACACATGGGCAGTTTTGGTATTTTTAGAAAATGCTAGGTGCACCAGCAATAATGCTGGGTGCACCTAGCAACACCCTTACCATTT

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