SE1820237

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10565
  • Glycine max
  • SE1820237
  • Mutator
  • M46
  • Gm01:47928060-47928490
  • TTTATTATA
  • TATTATAGGGTTAATTAAATTTTTAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TT  T  T            A        CCCTAAACTT       T       -A              C          --  AGTCAAGTTTTCTAAATTTTTTCGAAATTTGATTTTTAGTTCCTAAACAAAAATTTGACTAGTTTTTAACTTTTTTTTTATTAAGGATTTTAGTCTTGAAAAAAAATCAATTTTTAATCCTTGAATCTCATCA
  TA TA AGGGTTAATTAA TTTTTAGT          TTTTTTT AAATTTG  TTTTAGTCCTTAAA AAAAATTTGA  TT                                                                                                                                     
  || || |||||||||||| ||||||||          ||||||| |||||||  |||||||||||||| ||||||||||  ||                                                                                                                                     A
  AT AT TCCTAATTGATT AAAAATCA          AAAAAAA TTTAAAT  AAAATCAGGAATTT TTTTTAGACT  CT                                                                                                                                     
AT  T  T            C        ---AAAAATT       C       CA              A          GA  AATTCCAGGAAGTTAAAAAAAAAGGTAATTCTAAAAATCAAAGATTTAAAAACAAACTAGTCAGTTCTAGGGATATAAAAATCTTTAAAGTCAAAAATTAGGTATTTGTTTTCAAACTTGAGTAAAATAAACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End