Plant MITE

SE1830238

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10566
Glycine max
SE1830238
hAT
Hat12
Gm15:7878537-7878695
AGTGCACT
AGTGCACTCAATGTTT

Secondary structure and sequence

TSD TIR

5'

3'

           T    TAAATAT   -     TTGC  --T   --     ATTTTTCGATATCTCAGAAAATCGTAGACAAATG
AGTGCACTCAA GTTT       TGG TTGTG    GG   TTT  GTCGC                                  
||||||||||| ||||       ||| |||||    ||   |||  |||||                                  C
TCACGTGAGTT CAAA       ACC GGCAC    CC   CTT  TAGTT                                  
           C    -------   T     TAAA  TGA   CG     CTAAAAAATTGATAGGCGCTAGGGTTAACCCTGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830238

AGTGCACTCAATGTTTTAAATATTGGTTGTGTTGCGGTTTTGTCGCATTTTTCGATATCTCAGAAAATCGTAGACAAATGCGGTCCCAATTGGGATCGCGGATAGTTAAAAAATCTTGATGCTTCAGTCCAAATCACGGTCCAAAACCTTGAGTGCACT

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