SE1820243

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10571
  • Glycine max
  • SE1820243
  • Mutator
  • M1
  • Gm01:2062574-2062941
  • CAGTACATA
  • GTACATAGAGTGCTGCTAGGTGCACCTAGCATTATTGCTGCTGCACCCAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
 CA    ATA     C                    A      C           CTAACCACAAAAAAATAAAAATA  CCTTACGGATCAAGTTGATTCGTAAGTTAATTTTTAAGACTTACGGATCAACTTGATCCTAAGTCTTTTATGGATCAAATTGATCCGTAAGTTAATTTTTAAAACTTACG
   GTAC   GAGTG TGCTAGGTGCACCTAGCATT TTGCTG TGCACCCAGCA                       TC                                                                                                              
   ||||   ||||| |||||||||||||||||||| |||||| |||||||||||                       ||                                                                                                              G
   CATG   CTCAC ACGATCCACGTGGGTCGTAA AACGAC ACGTGGGTCGT                       CC                                                                                                              
ATA    -AC     A                    C      T           -----------AAGAAATTTTTA  ATTTTGACAGGGACGATTAAAGAAGGGAATGTCTAGTTCAACCAGGCATTCAACTAGAAATTCTGATTGCCTAGTTGAACTAGACATTTTCTTAATGTTTAGTTGAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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