Plant MITE

SE1820244

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10572
Glycine max
SE1820244
Mutator
M47
Gm08:13300360-13300559
TAATTATAT
TAATTATATGAG

Secondary structure and sequence

TSD TIR

5'

3'

         TAT   AAAAAAGA       C    A        -          A               CCC     GTATATT     TGTTGACTTTTAAA
   TAATTA   GAG        TTATGCA TGAC GTGTAAAA AGTTTTACAC GTCATCCAATCACAA   ACCAT       AAGTT              
   ||||||   |||        ||||||| |||| |||||||| |||||||||| |||||||||||||||   |||||       |||||              A
   ATTAAT   CTC        GATACGT ACTG CACATTTT TCAAAATGTG CAGTAGGTTAGTGTT   TGGTA       TTAAT              
TAT      ---   AAATTAAA       T    C        G          G               TAA     ----AAC     AAAATTCTATTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820244

TAATTATATGAGAAAAAAGATTATGCACTGACAGTGTAAAAAGTTTTACACAGTCATCCAATCACAACCCACCATGTATATTAAGTTTGTTGACTTTTAAAATAATTATCTTAAAATAATTCAAATGGTAATTTGTGATTGGATGACGGTGTAAAACTGTTTTACACCGTCATTGCATAGAAATTAAACTCTAATTATAT

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