SE1830246

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10574
  • Glycine max
  • SE1830246
  • hAT
  • Hat6
  • Gm05:17859844-17860450
  • TTTGTAAT
  • TTGTAATCATGGTTATCAAACTC

Secondary structure and sequence

TSD    TIR
5'



3'
T      T  T             --------------      TA ---    CT     TTACGAGTTTACGAGTCTACTTAACCTCTGTGAGTTGACTCTTGAGTAAACTCTTTTTTTAGTTGACTCTGAGTAGACTCTATAAACTCTAAGTAAACTCGGTAAACTCTCGAGTTTACCACCGAGTCAACGAGTCAACAAGTTAAAAATATTAGACCAAAATGTAAGTCATTTTGGGTTGTTTTTTGTTTGTTTAGTGTTCAACATACCTTCATTTAGTGTATTATTCTCAAATACAAAAATTCTCACATT
 TTGTAA CA GGTTATCAAACTC              TTAAGT  A   CTCG  AACTC                                                                                                                                                                                                                                                            
 |||||| || |||||||||||||              ||||||  |   ||||  |||||                                                                                                                                                                                                                                                             
 AATGTT GT CCAATAGTTTGAG              TGACCA  C   AAGT  ATCTG                                                                                                                                                                                                                                                            
T      T  T             CTCTCAAATGTATC      CT TCA    --     TGCTGAGCACCTGAGTTGAGTATCTGAGCATTCTCAGGTGAAGTATATTTTTATTATTGTTTTATAGATATTTATTGTATGGTTAATTTGTAAAGTTGTTATATTATTTAGTTTTATCATTTAGTATTTAAAGTGTTATGAATTTAGATCATTACGTAGTGATGATCTATTATTGAACGTCTACAATATCATCACCATCTAGTAAGAGTAACTCCTAAACTACAATCATCTCTTGTTACAAACTACAATAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End