SE1820249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10577
  • Glycine max
  • SE1820249
  • Mutator
  • M12
  • Gm20:27999387-27999975
  • TTTTAAGAA
  • TTTTAAGAAGGTTAAATTATTCATTTGGTCCCTATAGTTTCATGATTCTTACCTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
         A           T         CC                         ----    CCCTATAGTTTACATTTTAATTCTCTTTTAGTCCTTGTTGTTTAAAAGTGTTCTTTTTAGTCCTTATAGTTTGAAAGTGATATTTTTAATCCCTATAATTTGTATTTTAATTACCTATTAGACCTTACTACAAAAAAATATAAAAATAATTAGCTAAAAATTAGTAATAAATTACCAATTATTTTTTTACAAATTATCTTACCATAAATTAGTTACGAATTACTTGCTAAT
 TTTTAAGA GGTTAAATTAT CATTTGGTC  TATAGTTTCATGATTCTTACCTTTT    TAGT                                                                                                                                                                                                                                       
 |||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||    ||||                                                                                                                                                                                                                                       A
 AGAATTTT CCAATTTAATG GTAAACCAG  ATATCAAAGTGCTAAGAATGGAAAA    GGGA                                                                                                                                                                                                                                       
A        -           T         AA                         ACCA    TATTAAACTTTCACCAAAAAAATCAGGGATATCAAATGTAAAATTAATACAAAATCAGGGATATCAAAACTTTCACTAAAAAAATCAGGAATATTAAACATAAAATTAAAAGAAAATCAAGGATATCAAACTTTCACCAGAAAAATCAGGGATATAAAATATAAAATTAAGGTAAAATCAGGAATGGTAGTTTTATACTCATTATAATAGTTAATGTTAATTGATGTTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End