SE1860254

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10582
  • Glycine max
  • SE1860254
  • Micron
  • Mim2
  • Gm19:27737564-27737972
  • ATATATA
  • TATATGAGGATAGATCAAATTATATTGATGTAATTTTGACAACTATTACATCATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
ATA    T   -    ---               A                      T      TATAAC          GCG     TTTA -    CC AGCATTGAATTATATCTACATATTATCAAGATCATCTATGTCAAATTTTTTCAAAATTGAACAACAAGATAATAATCAAATAATCCATATTTAAGTATATTTTGAAATATTTAT
   TATA GAG GATA   GATCAAATTATATTG TGTAATTTTGACAACTATTACA CATTTT      TTGATATAGA   TGATT    T TGAT  T                                                                                                                  
   |||| ||| ||||   ||||||||||||||| |||||||||||||||||||||| ||||||      ||||||||||   |||||    | ||||  |                                                                                                                  A
   ATAT CTC CTAT   CTAGTTTAATGTGAC ACATTGAAACTGTTGATAATGT GTAAGA      TTGAAAGTAG   GCTAT    T CAAA  A                                                                                                                  
       -   T    CCC               C                      -      ----TA          --A     ---- A    -- GTATTTTGAGTGGTAACCTAACTTTCAAGGAAAGCGTATATAGTGTATACGTTTTTAAAGTATAATTAGGTTTTAATAACCGATGGAACAAATATATTTAATTTTTATTGCATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End