Plant MITE

SE1820257

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10585
Glycine max
SE1820257
Mutator
M1
Gm13:33846752-33847113
CATAAAATT
GGGTGTTGCTAGGTGCACCCAGCATTATTGTTGGTGCACCCAGCATTT

Secondary structure and sequence

TSD TIR

5'

3'

CATAAAATT                   C                            ---AA    AAATAA       -- T TTTGATCCGTAAGCTATTTAAGTTGATCCGTAAAAGTCTTACGGATCAACTTGATCCGTAAGCTTTTTACGGATCAAGTTGATCCGTATTGTTCCGTAAAAGG
         GGGTGTTGCTAGGTGCACC AGCATTATTGTTGGTGCACCCAGCATTT     GATG      TGAAAAT  A C                                                                                                       
         ||||||||||||||||||| ||||||||||||||||||||||||||||     ||||      |||||||  | |                                                                                                       C
         CCCACAACGATCCACGTGG TCGTAATAACAACCACGTGGGTCGTAAA     TTTA      TGGTTTT  C G                                                                                                       
TTAAAATAC                   -                            ATAAT    ------       AA - GGAATGCGAAAAAACCGTAAACACTACCTACACACTCCTACTAGGTATTTAGTATGCTTAGTACAACTAGGCATTCCAACTATGTCTAGTTGAACTAGGCATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820257

CATAAAATTGGGTGTTGCTAGGTGCACCCAGCATTATTGTTGGTGCACCCAGCATTTAAGATGAAATAATGAAAATATCTTTGATCCGTAAGCTATTTAAGTTGATCCGTAAAAGTCTTACGGATCAACTTGATCCGTAAGCTTTTTACGGATCAAGTTGATCCGTATTGTTCCGTAAAAGGCTTACGGATCAAGTTGATCTGTATCAACCTTACGGATCAACATGATTCGTATGATTTATGGATCATCCTCACACATCCATCACAAATGCCAAAAAAGCGTAAGGGCAATTTTGGTATTTTAATAAAATGCTGGGTGCACCAACAATAATGCTGGTGCACCTAGCAACACCCCATAAAATT

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